Instances Mappings (hg38) Track Settings
 
Mappings of Random (500 or less) Genomic Instances to the Consensus   (All Individual Repeat Mappings from the Human Genome tracks)

Display mode:   

Alignment Gap/Insertion Display Options Help on display options
Draw double horizontal lines when both genome and query have an insertion
Draw a vertical purple line for an insertion at the beginning or end of the
query, orange for insertion in the middle of the query
View table schema

Description

This track shows the alignment of a random subset of 500 individual genomic instances (hg38) of this repeat type to the consensus. Only 500 instances are shown as this track tends to crash the browser otherwise.

Methods

As part of the buildLiftOver step, psl files for each consensus and all it's individual instances are generated. 500 of these elements were randomly taken from each file using the bash shuf command and combined into a bigPsl track.

Email:jferna10@ucsc.edu or max@soe.ucsc.edu