Description
This track shows the meta summits from data processed from the UW hg19 Genome Browser track
Display Conventions and Configuration
Meta summits are initially required to be above a threshold score of 100 (macs2 summit score).
Use in combination with the corresponding coverage and instance mapping tracks.
Methods
Using the Repeat Browser bed files (see "instance mapping tracks") we used macs2 to call peaks with the following settings
macs2 callpeak -f BED -t --keep-dup all --outdir data/macs2/ --nomodel --call-summits --extsize 30 -n
macs2 summits and peaks can be found in data/macs2 if you would like to load custom tracks with less stringently filtered meta summits.
References
UW hg19 Genome Browser track
Email max@soe.ucsc.edu or jferna10@ucsc.edu
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