Description

This track shows gene predictions produced by GeneMark-ET generated by BRAKER that were used for training AUGUSTUS.

Methods

The methods for running BRAKER and generating this track are described at the AUGUSTUS gene prediction track description page.

This tracks visualizes the BRAKER output file traingenes.gtf.

Credits

The consortium for this project consists of:

• Dannise V. Ruiz-Ramos (Department of Life and Environmental Sciences, 5200 North Lake Road, University of California, Merced, CA 95616, USA)
• Lauren M. Schiebelhut (Department of Evolution and Ecology, One Shields Avenue, University of California, Davis, CA 95343, USA)
• Katharina J. Hoff (University of Greifswald, Institute for Computer Science and Mathematics, Walther-Rathenau-Str. 47, 17487 Greifswald, Germany)
• John P. Wares (Department of Genetics and the Odum School of Ecology, University of Georgia, Athens, GA, USA)
• Michael N. Dawson (Department of Life and Environmental Sciences, 5200 North Lake Road, University of California, Merced, CA 95616, USA)

References

• GeneMark-ET: A. Lomsadze, P.D. Burns and M. Borodovsky (2014) Integration of mapped RNA-Seq reads into automatic training of eukaryotic gene finding algorithm. Nucleic Acids Research, doi:10.1093/nar/gku557

Contact for this track data hub: katharina.hoff@uni-greifswald.de